Welcome to the seq_consensus documentation!

Seq_consensus is a Python library for calculating consensus sequences.

Contents

• Usage
  • Installation
  • Using the Python library
  • Commandline tool
• API
  • AlignmentFrequencies
    • AlignmentFrequencies.add()
    • AlignmentFrequencies.column_freqs()
    • AlignmentFrequencies.consensus()
    • AlignmentFrequencies.coverage()
    • AlignmentFrequencies.matrix()
    • AlignmentFrequencies.normalized_column_freqs()
    • AlignmentFrequencies.normalized_matrix()
    • AlignmentFrequencies.num_seqs()
  • AlphabetLookupError
  • consensus()